Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph packed.cwl#workflow_mc.cwl

https://github.com/mr-c/cwltests.git

Path: cwl/packed.cwl

Branch/Commit ID: pack_test

Packed ID: workflow_mc.cwl

workflow graph Simple md5sum tool

[![Docker Repository on Quay.io](https://quay.io/repository/briandoconnor/dockstore-tool-md5sum/status \"Docker Repository on Quay.io\")](https://quay.io/repository/briandoconnor/dockstore-tool-md5sum) [![Build Status](https://travis-ci.org/briandoconnor/dockstore-tool-md5sum.svg)](https://travis-ci.org/briandoconnor/dockstore-tool-md5sum) A very, very simple Docker container for the md5sum command. See the [README](https://github.com/briandoconnor/dockstore-tool-md5sum/blob/master/README.md) for more information.

https://github.com/briandoconnor/dockstore-workflow-md5sum.git

Path: md5sum.cwl

Branch/Commit ID: develop

workflow graph lobSTR-workflow.cwl

https://github.com/common-workflow-language/cwlviewer.git

Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl

Branch/Commit ID: master

workflow graph 5S-from-tablehits.cwl

https://github.com/mr-c/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: viz

workflow graph Detect Variants workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/detect_variants.cwl

Branch/Commit ID: toil_compatibility

workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: master

workflow graph Unaligned BAM to BQSR and VCF

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/workflow.cwl

Branch/Commit ID: master

workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: toil_compatibility

workflow graph gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval-list.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval-list.cwl

Branch/Commit ID: master

workflow graph Exome QC workflow

https://github.com/genome/arvados_trial.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: master